Results can write to STDOUT by specifying Using this option youĬan specify the input file is Ensembl, VCF, IDs, HGVS, SPDI or region format.Ĭan use compressed version (gzipped) of any file format listed above. "ensembl", "vcf", "hgvs", "id", "region", "spdi".īy default, VEP auto-detects the input file format. Or HGVS notation quickly to vep: -input_data rs699 May be used, for example, to input a single rsID If not specified, VEP will attempt to read from STDIN. Installed, this will be chosen by default. If not specified and you have only 1 assembly version The cache, you must have the appropriate assembly's cache file Select the assembly version to use if more than one available. Registry does not have to load all available database aliases on Latin name can speed up initial database connection as the Shortcut flag to switch on all of the following:
Will output lines that can be copied to a config file that canīe loaded in on the next run using -config. Normal and running VEP in verbose ( -v) mode. YouĬan create a quick version file of this by setting the flags as
Turn by any options specified on the command line. Those specified in a config file using -config, and in Any options in this file will be overridden by $HOME/.vep/vep.ini (or equivalent directory if using Should consist of whitespace-separated pairs of option names andĪ config file can also be implicitly read save the file as Load configuration options from a config file. 2 to reduce the amount, size, or value of something An 11% drop in imports helped shrink the trade deficit.Print out a bit more information while running. Companies are battling for a share of the shrinking market. In the past decade, the number of employees has shrunk 30%. From Longman Business Dictionary shrink shrink / ʃrɪŋk / verb ( past tense shrank / ʃræŋk /, past participle shrunk / ʃrʌŋk / ) 1 to become smaller in amount, size, or value The economy is expected to shrink slightly. The shrinks at the hospital said they think Gary needs therapy.She was sorry for him, but she was no shrink.
He went to another shrink, who prescribed another set of antidepressants.That guy's crazy - he ought to see a shrink.Richard saw a shrink, who gave him a prescription for antidepressants.Willis returns as a criminal on the run, hunted by cops, believed only by a shrink played by Madeleine Stowe.shrink shrink 2 noun informal DOCTOR a psychoanalyst or psychiatrist – used humorously Examples from the Corpus shrink So mounds of snow never shrink, they turn into icebergs.This explains why even our most effective efforts to move people into jobs seem never to shrink the welfare rolls.We hope these reforms will shrink the nation's budget deficit.There has been a steadily shrinking supply of it.Profits have been shrinking over the last year.As the family has shrunk it has also lost some of its traditional functions to the public world.Its domestic share shrank from nearly 10 percent to just over 7 percent.After 5 months of chemotherapy treatment like this, the tumours shrank.Don't wash that sweater in the machine - it'll shrink.→ shrink from something → See Verb table Examples from the Corpus shrink His anger was enough to make the others shrink away from him. Meredith was scared of him and shrank back. 3 BACK/BACKWARDS to move back and away from something, especially because you are frightened She listened, shrinking under the blankets, to their shouts. We want to expand the business, not shrink it. shrink to The firm’s staff had shrunk to only four people. → pre-shrunk, shrunken 2 VALUE LESS to become or to make something smaller in amount, size, or value OPP grow The city continued to shrink. ○ verb ( past tense shrank / ʃræŋk /, past participle shrunk / ʃrʌŋk / ) 1 SMALL to become smaller, or to make something smaller, through the effects of heat or water I’m worried about washing that shirt in case it shrinks.From Longman Dictionary of Contemporary English shrink shrink 1 / ʃrɪŋk /
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